without_OMAT_gene
0.52208500000000002128
<html><body><title>AT5G09910.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u520991001000i/AT5G09910.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u520991001000i/AT5G09910.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u520991001000i/AT5G09910.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520928001000i">AT5G09280.1</a></td><td>0.924989</td><td>pectate lyase family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325200001000i">AT3G52000.1</a></td><td>0.920533</td><td>scpl36 (serine carboxypeptidase-like 36)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325661001000i">AT3G56610.1</a></td><td>0.916757</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221650501000i">AT2G16505.1</a></td><td>0.909951</td><td>Encodes a Maternally expressed gene (MEG) family protein</td><td>OMAT2P102030</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421481001000i">AT4G14810.1</a></td><td>0.899345</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420214001000i">AT4G02140.1</a></td><td>0.898057</td><td>unknown protein</td><td>OMAT4P100810</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222731501000i">AT2G27315.1</a></td><td>0.895644</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321385001000i">AT3G13850.1</a></td><td>0.893885</td><td>LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421050701000i">AT4G10507.1</a></td><td>0.888421</td><td>other RNA</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423386001000i">AT4G33860.1</a></td><td>0.888108</td><td>glycosyl hydrolase family 10 protein</td><td>OMAT4P109840</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420813801000i">AT4G08138.1</a></td><td>-0.696009</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221040501000i">AT2G10405.1</a></td><td>-0.659839</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220137201000i">AT2G01372.1</a></td><td>-0.647179</td><td>Pseudogene of AT3G13062</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422007001000i">AT4G20070.1</a></td><td>-0.619254</td><td>ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase)</td><td>OMAT4P006120</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525577001000i">AT5G55770.1</a></td><td>-0.609366</td><td>DC1 domain-containing protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520345501000i">AT5G03455.1</a></td><td>-0.604824</td><td>CDC25</td><td>OMAT5P000970</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221250001000i">AT2G12500.1</a></td><td>-0.603502</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420665401000i">AT4G06654.1</a></td><td>-0.60185</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223558001000i">AT2G35580.1</a></td><td>-0.5996</td><td>serpin family protein / serine protease inhibitor family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u190000103000i">ath-MIR395d</a></td><td>-0.579364</td><td>ath-MIR395d</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u520991001000i/AT5G09910.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 7.70e-11</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>7.70e-11 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006796</td><td>phosphate metabolic process</td><td>14/200</td><td>2.11</td><td>2.92e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006793</td><td>phosphorus metabolic process</td><td>14/200</td><td>2.11</td><td>2.95e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006810</td><td>transport</td><td>18/200</td><td>1.76</td><td>7.31e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0051234</td><td>establishment of localization</td><td>18/200</td><td>1.75</td><td>7.53e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>84/200</td><td>3.46</td><td>3.63e-27</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>138/200</td><td>1.51</td><td>8.64e-12</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0031224</td><td>intrinsic to membrane</td><td>17/200</td><td>3.17</td><td>8.43e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0016021</td><td>integral to membrane</td><td>12/200</td><td>3.90</td><td>1.49e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044425</td><td>membrane part</td><td>20/200</td><td>2.53</td><td>4.86e-05</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>5</td><td>GO:0004091</td><td>carboxylesterase activity</td><td>16/200</td><td>7.99</td><td>2.38e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0016788</td><td>hydrolase activity, acting on ester bonds</td><td>20/200</td><td>3.37</td><td>6.31e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0016773</td><td>phosphotransferase activity, alcohol group as acceptor</td><td>17/200</td><td>2.74</td><td>5.71e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0015075</td><td>ion transmembrane transporter activity</td><td>11/200</td><td>3.51</td><td>8.25e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0022891</td><td>substrate-specific transmembrane transporter activity</td><td>13/200</td><td>2.95</td><td>1.55e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0022892</td><td>substrate-specific transporter activity</td><td>14/200</td><td>2.71</td><td>2.37e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016787</td><td>hydrolase activity</td><td>29/200</td><td>1.86</td><td>4.26e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0016301</td><td>kinase activity</td><td>18/200</td><td>2.24</td><td>4.90e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0022857</td><td>transmembrane transporter activity</td><td>13/200</td><td>2.31</td><td>1.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016772</td><td>transferase activity, transferring phosphorus-containing groups</td><td>18/200</td><td>1.96</td><td>2.24e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0006345</td><td>pollen tube</td><td>94/200</td><td>3.23</td><td>1.12e-28</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>134/200</td><td>1.28</td><td>9.09e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>133/200</td><td>1.28</td><td>1.18e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>134/200</td><td>1.23</td><td>9.31e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>107/200</td><td>1.29</td><td>2.26e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009032</td><td>petal</td><td>107/200</td><td>1.22</td><td>2.36e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>112/200</td><td>1.19</td><td>4.89e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>112/200</td><td>1.19</td><td>4.89e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009031</td><td>sepal</td><td>109/200</td><td>1.18</td><td>7.51e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0007605</td><td>androecium developmental stages</td><td>95/200</td><td>3.24</td><td>3.08e-29</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>134/200</td><td>1.28</td><td>9.55e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>130/200</td><td>1.28</td><td>2.13e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>123/200</td><td>1.27</td><td>7.99e-05</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pollen</td><td>-</td><td>95/200</td><td>10.64</td><td>1.07e-74</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>germinated</td><td>-</td><td>81/200</td><td>14.64</td><td>8.27e-74</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>105/200</td><td>7.99</td><td>6.21e-71</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stage</td><td>-</td><td>116/200</td><td>5.99</td><td>4.96e-66</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>mature</td><td>-</td><td>84/200</td><td>9.39</td><td>1.32e-60</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>petal</td><td>-</td><td>95/200</td><td>6.51</td><td>5.15e-55</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>95/200</td><td>6.46</td><td>1.00e-54</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>95/200</td><td>6.28</td><td>1.26e-53</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>globular</td><td>-</td><td>53/200</td><td>14.12</td><td>1.37e-46</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>85/200</td><td>3.60</td><td>9.26e-29</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>86/200</td><td>3.55</td><td>9.55e-29</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>flower</td><td>-</td><td>31/200</td><td>4.06</td><td>7.06e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>whorl</td><td>-</td><td>17/200</td><td>7.27</td><td>3.05e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pectin</td><td>-</td><td>14/200</td><td>9.24</td><td>4.33e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>sepal</td><td>-</td><td>16/200</td><td>7.41</td><td>7.70e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>pectinesterase</td><td>-</td><td>11/200</td><td>11.72</td><td>2.12e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>gametophyte</td><td>-</td><td>20/200</td><td>5.09</td><td>5.42e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>lipid</td><td>-</td><td>15/200</td><td>4.37</td><td>4.29e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>inhibitor</td><td>-</td><td>13/200</td><td>4.35</td><td>2.17e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>member</td><td>-</td><td>27/200</td><td>2.46</td><td>5.02e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>integral</td><td>-</td><td>13/200</td><td>3.65</td><td>1.60e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>calcium</td><td>-</td><td>11/200</td><td>4.13</td><td>1.73e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>locus</td><td>-</td><td>10/200</td><td>4.17</td><td>3.32e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>similarity</td><td>-</td><td>10/200</td><td>4.16</td><td>3.39e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>amino</td><td>-</td><td>20/200</td><td>2.32</td><td>1.60e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>phosphorylation</td><td>-</td><td>16/200</td><td>2.60</td><td>1.62e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr000719</td><td>-</td><td>15/200</td><td>2.41</td><td>5.69e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>serine</td><td>-</td><td>19/200</td><td>2.13</td><td>6.59e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr011009</td><td>-</td><td>15/200</td><td>2.32</td><td>8.41e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>threonine</td><td>-</td><td>16/200</td><td>2.13</td><td>1.50e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>active</td><td>-</td><td>17/200</td><td>2.08</td><td>1.53e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>sequence</td><td>-</td><td>10/200</td><td>2.63</td><td>1.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>kinase</td><td>-</td><td>20/200</td><td>1.89</td><td>2.15e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr008271</td><td>-</td><td>11/200</td><td>2.25</td><td>3.92e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transport</td><td>-</td><td>18/200</td><td>1.85</td><td>4.26e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>region</td><td>-</td><td>24/200</td><td>1.66</td><td>5.24e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transmembrane</td><td>-</td><td>14/200</td><td>1.93</td><td>6.56e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr017442</td><td>-</td><td>11/200</td><td>2.09</td><td>7.04e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>receptor</td><td>-</td><td>10/200</td><td>2.10</td><td>8.73e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
AT5G09910.1